HUMAN STUDIES: Oishi K, Faria A, Jiang H, Li X, Akhter K, Zhang J, Hsu JT, Miller MI, van Zijl PC, Albert M, Lyketsos CG, Woods R, Toga AW, Pike GB, Rosa-Neto P, Evans A, Mazziotta J, Mori S. “Atlas-based whole brain white matter analysis using large deformation diffeomorphic metric mapping: application to normal elderly and Alzheimer's disease participants.” Neuroimage. 2009 Jun;46(2):486-99. Oishi K, Zilles K, Amunts K, Faria A, Jiang H, Li X, Akhter K, Hua K, Woods R, Toga AW, Pike GB, Rosa-Neto P, Evans A, Zhang J, Huang H, Miller MI, van Zijl PC, Mazziotta J, Mori S. “Human brain white matter atlas: identification and assignment of common anatomical structures in superficial white matter.” Neuroimage. 2008 Nov 15;43(3):447-57. Mori S, Oishi K, Jiang H, Jiang L, Li X, Akhter K, Hua K, Faria AV, Mahmood A, Woods R, Toga AW, Pike GB, Neto PR, Evans A, Zhang J, Huang H, Miller MI, van Zijl P, Mazziotta J. “Stereotaxic white matter atlas based on diffusion tensor imaging in an ICBM template.” Neuroimage. 2008 Apr 1;40(2):570-82. Kenichi Oishi, Andreia V. Faria, Peter C. M. van Zijl, and Susumu Mori, “ MRI Atlas of Human White Matter, 2nd edition ” Academic Press, 2010, ISBN 0123820812, 9780123820815 Mori, S., Wakana, S., Nagae-Poetscher, L., van Zijl, PCM., “MRI Atlas of Human White Matter”, Elsevier Lehmann HC, Zhang J, Mori S, Sheikh KA. “ Diffusion tensor imaging to assess axonal regeneration in peripheral nerves.”, Exp Neurol. 2010 May;223(1):238-44. Epub 2009 Oct 29. Vasung L, Huang H, Jovanov-Miloševi? N, Pletikos M, Mori S, Kostovi? I. “ Development of axonal pathways in the human fetal fronto-limbic brain: histochemical characterization and diffusion tensor imaging.”, J Anat. 2010 Jun 29. /li> Reich DS, Ozturk A, Calabresi PA, Mori S. “ Automated vs. conventional tractography in multiple sclerosis: variability and correlation with disability.”, Neuroimage. 2010 Feb 15;49(4):3047-56. Epub 2009 Nov 26. Choi JT, Vining EP, Mori S, Bastian AJ. “ Sensorimotor function and sensorimotor tracts after hemispherectomy”, Neuropsychologia. 2010 Apr;48(5):1192-9. Epub 2009 Dec 16. Qiu A, Oishi K, Miller MI, Lyketsos CG, Mori S, Albert M. “ Surface-based analysis on shape and fractional anisotropy of white matter tracts in Alzheimer's disease.”, Published by Elsevier Inc. Fatemi SH, Folsom TD, Reutiman TJ, Abu-Odeh D, Mori S, Huang H, Oishi K. “ Abnormal expression of myelination genes and alterations in white matter fractional anisotropy following prenatal viral influenza infection at E16 in mice.”, Schizophr Res. 2009 Jul;112(1-3):46-53. Epub 2009 May 31. Huang H, Xue R, Zhang J, Ren T, Richards LJ, Yarowsky P, Miller MI, Mori S. “ Anatomical characterization of human fetal brain development with diffusion tensor magnetic resonance imaging.”, J Neurosci. 2009 Apr 1;29(13):4263-73. Oishi K, Faria A, Jiang H, Li X, Akhter K, Zhang J, Hsu JT, Miller MI, van Zijl PC, Albert M, Lyketsos CG, Woods R, Toga AW, Pike GB, Rosa-Neto P, Evans A, Mazziotta J, Mori S. “ Atlas-based whole brain white matter analysis using large deformation diffeomorphic metric mapping: application to normal elderly and Alzheimer's disease participants.”, Neuroimage. 2009 Jun;46(2):486-99. Hoon AH Jr, Stashinko EE, Nagae LM, Lin DD, Keller J, Bastian A, Campbell ML, Levey E, Mori S, Johnston MV. “ Sensory and motor deficits in children with cerebral palsy born preterm correlate with diffusion tensor imaging abnormalities in thalamocortical pathways.”, Dev Med Child Neurol. 2009 Sep;51(9):697-704. Epub 2009 Mar 30. Mori S, Oishi K, Faria AV. “ White matter atlases based on diffusion tensor imaging.”, Curr Opin Neurol. 2009 Aug;22(4):362-9. Oishi K, Konishi J, Mori S, Ishihara H, Kawamitsu H, Fujii M, Kanda F. “ Reduced fractional anisotropy in early-stage cerebellar variant of multiple system atrophy.”, J Neuroimaging. 2009 Apr;19(2):127-31. Epub 2008 Jun 28. Ceritoglu C, Oishi K, Li X, Chou MC, Younes L, Albert M, Lyketsos C, van Zijl PC, Miller MI, Mori S. “ Multi-contrast large deformation diffeomorphic metric mapping for diffusion tensor imaging.”, Neuroimage. 2009 Aug 15;47(2):618-27. Epub 2009 May 3. Sakai K, Azuma T, Mori S. “ Rigid diffusion phantom: acquisition and simulation.”, Conf Proc IEEE Eng Med Biol Soc. 2008;2008:451-3. Hua K, Oishi K, Zhang J, Wakana S, Yoshioka T, Zhang W, Akhter KD, Li X, Huang H, Jiang H, van Zijl P, Mori S. “ Mapping of functional areas in the human cortex based on connectivity through association fibers.”, Cereb Cortex. 2009 Aug;19(8):1889-95. Epub 2008 Dec 9. Oishi K, Zilles K, Amunts K, Faria A, Jiang H, Li X, Akhter K, Hua K, Woods R, Toga AW, Pike GB, Rosa-Neto P, Evans A, Zhang J, Huang H, Miller MI, van Zijl PC, Mazziotta J, Mori S. “ Human brain white matter atlas: identification and assignment of common anatomical structures in superficial white matter.”, Neuroimage. 2008 Nov 15;43(3):447-57. Epub 2008 Jul 18. Zhang W, Olivi A, Hertig SJ, van Zijl P, Mori S. “ Automated fiber tracking of human brain white matter using diffusion tensor imaging.”, Neuroimage. 2008 Aug 15;42(2):771-7. Epub 2008 Apr 30. Huang H, Ceritoglu C, Li X, Qiu A, Miller MI, van Zijl PC, Mori S. “ Correction of B0 susceptibility induced distortion in diffusion-weighted images using large-deformation diffeomorphic metric mapping.”, Magn Reson Imaging. 2008 Nov;26(9):1294-302. Epub 2008 May 21. Landman BA, Farrell JA, Huang H, Prince JL, Mori S. “ Diffusion tensor imaging at low SNR: nonmonotonic behaviors of tensor contrasts.”, Magn Reson Imaging. 2008 Jul;26(6):790-800. Epub 2008 May 21. Mori S, Oishi K, Jiang H, Jiang L, Li X, Akhter K, Hua K, Faria AV, Mahmood A, Woods R, Toga AW, Pike GB, Neto PR, Evans A, Zhang J, Huang H, Miller MI, van Zijl P, Mazziotta J. “ Stereotaxic white matter atlas based on diffusion tensor imaging in an ICBM template”, Neuroimage. 2008 Apr 1;40(2):570-82. Epub 2008 Jan 3. Zhang W, Li X, Zhang J, Luft A, Hanley DF, van Zijl P, Miller MI, Younes L, Mori S. “ Landmark-referenced voxel-based analysis of diffusion tensor images of the brainstem white matter tracts: application in patients with middle cerebral artery stroke.”, Neuroimage. 2009 Feb 1;44(3):906-13. Epub 2008 Sep 25. Zhang J, Evans A, Hermoye L, Lee SK, Wakana S, Zhang W, Donohue P, Miller MI, Huang H, Wang X, van Zijl PC, Mori S. “ Evidence of slow maturation of the superior longitudinal fasciculus in early childhood by diffusion tensor imaging.”, Neuroimage. 2007 Nov 1;38(2):239-47. Epub 2007 Aug 8. Mori S, van Zijl P. “ Human white matter atlas.”, Am J Psychiatry. 2007 Jul;164(7):1005. Toga AW, Thompson PM, Mori S, Amunts K, Zilles K. “ Towards multimodal atlases of the human brain.”, Nat Rev Neurosci. 2006 Dec;7(12):952-66. Hikida T, Jaaro-Peled H, Seshadri S, Oishi K, Hookway C, Kong S, Wu D, Xue R, Andradé M, Tankou S, Mori S, Gallagher M, Ishizuka K, Pletnikov M, Kida S, Sawa A. “ Dominant-negative DISC1 transgenic mice display schizophrenia-associated phenotypes detected by measures translatable to humans.”, Proc Natl Acad Sci U S A. 2007 Sep 4;104(36):14501-6. Epub 2007 Aug 3. Bonekamp D, Nagae LM, Degaonkar M, Matson M, Abdalla WM, Barker PB, Mori S, Horská A. “ Diffusion tensor imaging in children and adolescents: reproducibility, hemispheric, and age-related differences.”, Neuroimage. 2007 Jan 15;34(2):733-42. Epub 2006 Nov 7. Reich DS, Smith SA, Zackowski KM, Gordon-Lipkin EM, Jones CK, Farrell JA, Mori S, van Zijl PC, Calabresi PA. “ Multiparametric magnetic resonance imaging analysis of the corticospinal tract in multiple sclerosis.”, Neuroimage. 2007 Nov 1;38(2):271-9. Epub 2007 Aug 15. Hermoye, L, Saint-Martin, C., Cosnard, G., Lee, S-K, Kim, J., Nassogne, M-C., Menten, R., Clapuyt, P., Donohue, PK, Hua, K., Wakana, S, Jiang, H, van Zijl, PCM., Mori, S, “Pediatric diffusion tensor imaging: Normal database and observation of the white matter maturation in early childhood”, Neuroimage, 29, 493-504 (2006) Jiang, H., van Zijl, PCM, Kim J., Pearlson, GD, Mori, S.,”DtiStudio: Resource program for diffusion tensor computation and fiber bundle tracking”, Computer Methods and Programs in Biomedicine, 81, 106-116 (2006) Ren, T., Anderson, A., Shen, W-B., Huang, H., Plachez, C., Zhang, J., Mori, S., Kinsman, SL., Richard, LJ., “Imaging, anatomical and molecular analysis of callosal formation in the developing human fetal brain”, Anatomical Record, 288, 191-204 (2006) Roberts, TP., Liu, F., Kassner, A., Mori, S., Guha, A., “Fiber density index correlates with reduced fractional anisotropy in white matter of patients with glioblastoma”, AJNR, 26, 2183-2186, (2005) Yamada, I, Kizu, O, Ito, H, Kubota, T., Akada, W., Goto, M, Takeda, A, Konishi, J. Sasajima, H., Mineura K, Mori, S, Nishimura T., “Tractography for arteriovenous malformations near the sensorimotor cortices”, AJNR, 26, 598-602 (2005) Dubey, P., Fatemi, A, Huang H, Nagae-Poetscher, L, Wakana, S, Barker, P, van Zijl, PCM, Moser, HW, Mori, S, Raymond, GV, “Diffusion tensor 3D-fiber tracing reveals occult tract specific structural abnormalities in “Pure” adrenomyeloneuropathy”, Annal. Neurol. 58, 758-766, (2005) Zackowski, KM, Dubey, P, Raymond, MD, Mori, S, Bastain, AJ, Moser, HW, “Relating sensorimotor function and axonal integrity in adrenobyeloneuropathy”, Archives of Neurology, in press Yamada, K, Ito, H., Nakamura, H., Kizu, O., Akada, W., Kubota, T., Goto, M., Konishi, J., Yoshikawa, K., Shiga, K., Nakagawa, M., Mori, S., Nishimura, T., “Stroke patients’ evolving symptoms assessed by tractography”, J. Magn. Reson. Imaging, 20, 923-929 (2004) Takahashi, T, Kinsman, S., Makris, N., Grant, E., Haselgrove, C., McInerney, S., Kennedy, DN., Takahashi, T., Fredrickson, K., Mori, S., Caviness, VS., “Holoprosencephaly-Topologic variations in a Liveborn series: A general model based upon MRI analysis”, J. Neurocytol, 33, 23-35 (2004) Lee, SK, Kim, DI., Mori, S., Kim, J., Kim, HD., Heo, K., Lee, BI., “Diffusion tensor MRI visualize decreased subcortical fiber connectivity in focal cortical dysplasia”, NeuroImage, 22, 1826-1829 (2004) Lee, SK, Mori, S., Kim, D.J., Kim, S.Y., Kim, S.Y., Kim, D.I., “Diffusion tensor MR imaging visualizes the altered hemispheric fiber connection in callosal dysgenesis”, Am. J. Neuroradiol., 25, 25-28 (2004) Amiry-Moghaddam, M., Xue, R, Haug, F.M., Neely, J.D., Bhardwaj, A., Agre, P., Adams, M., Froehner, S.D., Mori, S., Ottersen, O.P., “Alpha Syntrophin deletion removes the perivascular but not the endothelial pool of aquaporin-4 at the blood-brain-barrier and delays the development of brain edema in an experimental model of acute hyponatremia”, FASEB, 18, 542-544 (2004) Nagae-Poetscher, L.M., Jiang, H., Wakana, S., Golay, X., van Zijl, P.C.M., Mori, S., “High-resolution Diffusion Tensor Imaging of Brainstem at 3 Tesla”, AJNR, 28, 1325-1330 (2004) Wakana, S., Jiang, H., Nagae-Poetscher, M., van Zijl, P.C.M., Mori, S., “A fiber-tract based atlas of Human white matter anatomy”, Radiology, 230, 77-87 (2004) (pdf downloading) Wakana, S., Jiang, H., Nagae-Poetscher, M., van Zijl, P.C.M., Mori, S., “A fiber-tract based atlas of Human white matter anatomy”, Radiology, 230, 77-87 (2004) Lee, SK., Mori, S., Kim DJ., Kim SY., Chu, M., Heo, K., Lee BI., Kim, DI., “Diffusion tensor MRI and fiber tractography of cerebellar atrophy in phenytoin users”, Epilepsia, 2003, 44, 1536-1540 (2003) Song, A.W., Harshbarger, T., Li, T., Kim, K.H., Ugurbil, K., Mori, S., Kim D, “Functional activation using diffusion coefficient dependent contrast allows better spatial localization to the neuronal activity: Evidence using diffusion tensor imaging and fiber tracking”, NeuroImage, 20, 955-961 (2003) Yamada, K., Mori, S., Nakamura, H, Ito, H., Kizu, O, Shiga, K, Yoshikawa, K, Makino, M, Yuen S, Kubota T, Tanaka O, Nishimura T., “Fiber-tracking method reveals sensorimotor pathway involvement in stroke patients”, Stroke, 34, 159-162, (2003) Takahashi, T., Kinsman, S., Makris, N., Grant, E., Haselgrove, C., Kennedy, D.N., Takahashi, T., Fredrickson, K., Mori, S., Caviness, V.S., “Semilobar holoprosencephaly with midline seam: A topologic and morphogenetic model based upon MRI analysis”, Cerebral Cortex, 12, 1299-1312 (2003) Yamada, K., Kizu, O., Mori, S., Ito, H., Nakamura, H., Yuen, S., Kubota, T., Tanaka, O., Akada, W., Sasajima, H., Mineura, K., Nishimura, T., “Brain fiber tracking with clinically feasible diffusion tensor MR imaging: Initial experience”, Radiology, 227, 295-301 (2003) Selnes, O.A., van Zijl, P.C.M., Barker, P.B., Hillis, A.E., Mori, S., “MR diffusion tensor imaging documented arcuate fasciculus lesion in a patient with normal repetition performance”, Aphasiology, 16, 897-901 (2002) Eichler, FS., Itoh, R, Barker, P.B., Mori, S., Garrett, E.S., van Zijl, P.C.M., Moser, H.W., Raymond, G.V., Melhem, E.R., “Proton MR spectroscopic and diffusion tensor brain MR imaging in X-linked adrenoleukodystrophy: Initial experience”, Radiology, 225, 245-252 (2002) Hoon, A.H., Lawrie, W.T., Melhem, E.R. Reinhardt, E.M., Solaiyappan, M., Jiang, H., Johnston, M.V., and Mori, S., "Diffusion tensor imaging of PVL shows affected sensory cortex white matter pathways", Neurology, (2002) Albayram, S., Melhem, E.R., Mori, S., Zinreich, J., Barkovich, A.J., Kinsman, S.L., "Diffusion Tensor MR Imaging of White Matter Tracts of the Brainstem in Children with Holoprosencephaly: Initial Experience", Radiology, 223, 645-651 (2002) Mori S, Fredericksen K, van Zijl PC, Stieltjes, B., Kraut, A.K., Solaiyappan, M., Pomper, M.D., "Brain white matter anatomy of tumor patients using diffusion tensor imaging." Annals of Neurol. 51, 377-380 (2002). Mori, S., W. E. Kaufmann, C. Davatzikos, B. Stieltjes, L. Amodei, K. Fredericksen, G. D. Pearlson, M. Solaiyappan, G. V. Raymond, H. W. Moser and P. C. van Zijl, "Imaging cortical association tracts in the human brain using diffusion-tensor-based axonal tracking", Magn. Reson. Med. 47, 215-223 (2002). Selnes, O.A., Mori, S., Barker, P.B., Hillis A.E., van Zijl, P.C.M., "Preserved repetition in a patient with MR diffusion tensor imaging documented arcuate fasciculus lesion", Brain and Language, 79, 95-98 (2001) Stieltjes, B., Kaufmann, W.E., van Zijl, P.C.M., Fredericksen, K., Pearlson, G.D., Mori, S., "Diffusion tensor imaging and axonal tracking of the human brainstem", NeuroImage, 14, 723-725 (2001) Ito, R., Melhem, E.R., Mori, S., Eichler, E.S., Raymond, G.V., Moser, H.W., "Diffusion tensor brain MR imaging in X-Linked Adrenoleukodystrophy", Neurology, 56, 544-547 (2001)
	ANIMAL STUDIES: Zhang J, Peng Q, Li Q, Jahanshad N, Hou Z, Jiang M, Masuda N, Langbehn DR, Miller MI, Mori S, Ross CA, Duan W. “ Longitudinal characterization of brain atrophy of a Huntington's disease mouse model by automated morphological analyses of magnetic resonance images.”, Neuroimage. 2010 Feb 1;49(3):2340-51. Epub 2009 Oct 19. Aggarwal M, Mori S, Shimogori T, Blackshaw S, Zhang J. “Three-dimensional diffusion tensor microimaging for anatomical characterization of the mouse brain.”, Magn Reson Med. 2010 Jul;64(1):249-61. Zhang Y, Zhang J, Oishi K, Faria AV, Jiang H, Li X, Akhter K, Rosa-Neto P, Pike GB, Evans A, Toga AW, Woods R, Mazziotta JC, Miller MI, van Zijl PC, Mori S. “ Atlas-guided tract reconstruction for automated and comprehensive examination of the white matter anatomy.”, Neuroimage. 2010 May 24. [Epub ahead of print] Faria AV, Zhang J, Oishi K, Li X, Jiang H, Akhter K, Hermoye L, Lee SK, Hoon A, Stashinko E, Miller MI, van Zijl PC, Mori S. “ Atlas-based analysis of neurodevelopment from infancy to adulthood using diffusion tensor imaging and applications for automated abnormality detection.”, Neuroimage. 2010 Aug 15;52(2):415-28. Epub 2010 Apr 24. Fatemi SH, Folsom TD, Reutiman TJ, Huang H, Oishi K, Mori S. “ Prenatal viral infection of mice at E16 causes changes in gene expression in hippocampi of the offspring.”, Eur Neuropsychopharmacol. 2009 Sep;19(9):648-53. Epub 2009 Jun 5. Zhang J, Jones M, DeBoy CA, Reich DS, Farrell JA, Hoffman PN, Griffin JW, Sheikh KA, Miller MI, Mori S, Calabresi PA. “ Diffusion tensor magnetic resonance imaging of Wallerian degeneration in rat spinal cord after dorsal root axotomy.”, J Neurosci. 2009 Mar 11;29(10):3160-71. Huang H, Yamamoto A, Hossain MA, Younes L, Mori S. “ Quantitative cortical mapping of fractional anisotropy in developing rat brains.”, J Neurosci. 2008 Feb 6;28(6):1427-33. Fatemi SH, Reutiman TJ, Folsom TD, Huang H, Oishi K, Mori S, Smee DF, Pearce DA, Winter C, Sohr R, Juckel G. “ Maternal infection leads to abnormal gene regulation and brain atrophy in mouse offspring: implications for genesis of neurodevelopmental disorders.”, Schizophr Res. 2008 Feb;99(1-3):56-70. Epub 2008 Jan 9. Zhang J, Zhang G, Morrison B, Mori S, Sheikh KA. “ Magnetic resonance imaging of mouse skeletal muscle to measure denervation atrophy.”, Exp Neurol. 2008 Aug;212(2):448-57. Epub 2008 May 10. Stone BS, Zhang J, Mack DW, Mori S, Martin LJ, Northington FJ. “ Delayed neural network degeneration after neonatal hypoxia-ischemia.”, Ann Neurol. 2008 Nov;64(5):535-46. Zhang J, Richards LJ, Miller MI, Yarowsky P, van Zijl P, Mori S. “ Characterization of mouse brain and its development using diffusion tensor imaging and computational techniques”, Conf Proc IEEE Eng Med Biol Soc. 2006;1:2252-5. Ren T, Zhang J, Plachez C, Mori S, Richards LJ. “ Diffusion tensor magnetic resonance imaging and tract-tracing analysis of Probst bundle structure in Netrin1- and DCC-deficient mice.”, J Neurosci. 2007 Sep 26;27(39):10345-9. Zhang J, van Zijl PC, Laterra J, Salhotra A, Lal B, Mori S, Zhou J. “ Unique patterns of diffusion directionality in rat brain tumors revealed by high-resolution diffusion tensor MRI.”, Magn Reson Med. 2007 Sep;58(3):454-62. Chen CH, Xue R, Zhang J, Li X, Mori S, Bhardwaj A. “ Effect of osmotherapy with hypertonic saline on regional cerebral edema following experimental stroke: a study utilizing magnetic resonance imaging.”, Neurocrit Care. 2007;7(1):92-100. DeBoy CA, Zhang J, Dike S, Shats I, Jones M, Reich DS, Mori S, Nguyen T, Rothstein B, Miller RH, Griffin JT, Kerr DA, Calabresi PA. “ High resolution diffusion tensor imaging of axonal damage in focal inflammatory and demyelinating lesions in rat spinal cord.”, ain. 2007 Aug;130(Pt 8):2199-210. Epub 2007 Jun 8. Turnbull DH, Mori S. “ MRI in mouse developmental biology.”, NMR Biomed. 2007 May;20(3):265-74. Ben-Hur T, van Heeswijk RB, Einstein O, Aharonowiz M, Xue R, Frost EE, Mori S, Reubinoff BE, Bulte JW. “ Serial in vivo MR tracking of magnetically labeled neural spheres transplanted in chronic EAE mice.”, Magn Reson Med. 2007 Jan;57(1):164-71. Lehmann HC, Lopez PH, Zhang G, Ngyuen T, Zhang J, Kieseier BC, Mori S, Sheikh KA. “ Passive immunization with anti-ganglioside antibodies directly inhibits axon regeneration in an animal model.”, J Neurosci. 2007 Jan 3;27(1):27-34. Landman BA, Farrell JA, Jones CK, Smith SA, Prince JL, Mori S. “ Effects of diffusion weighting schemes on the reproducibility of DTI-derived fractional anisotropy, mean diffusivity, and principal eigenvector measurements at 1.5T.”, Neuroimage. 2007 Jul 15;36(4):1123-38. Epub 2007 Apr 4. Wakana S, Caprihan A, Panzenboeck MM, Fallon JH, Perry M, Gollub RL, Hua K, Zhang J, Jiang H, Dubey P, Blitz A, van Zijl P, Mori S. “ Reproducibility of quantitative tractography methods applied to cerebral white matter.”, Neuroimage. 2007 Jul 1;36(3):630-44. Epub 2007 Mar 20. Andrews W, Liapi, A., Plachez, C., Camurri, L., Zhang J., Mori, S., Murakami, F., Parnavelas, JG., Sundaresan, V., and Richards, LJ., "Robo 1 regulates the development of major axon tracts and interneuron migration in the forebrain, Development", 133, 2243-2252 (2006) Wang, Y., Zhang, J., Mori, S., Nathans, J., “Axonal growth and guidance defects in Frixxled3 knock-out mice: a comparison of diffusion tensor magnetic resonance imaging, neurofilament staining, and genetically directed cell labeling”, J. Neurosci. 26, 355-364 (2006) Mori, S., Zhang, J., Bulte, JW., “ Magnetic resonance microscopy of mouse brain development”, Method Mol Med. 124, 129-147, (2006) Verna, R, Mori, S., Shen, D., Zhang, J., Yarowsky, P., Davatzikos, C., “Spatio-temporal maturation patterns of murine brain quantified via diffusion tensor MRI and deformation-based morphometry”, Proc. Nation. Acad. Sci., 102, 6978-6983, (2005) Zhang, J. Miller, M., Yarowsky, P., van Zijl, P., Mori, S., “Mappting postnatal mouse brain development with diffusion tensor microimaging”, NeuroImage, 26, 1042-1051 (2005) Zhang, J., Chen, Y., Hardwick, M., Miller, M., Plachez, C., Richards, L., Yarowsky, P., van Zijl, P., Mori, S., “Magnetic resonance diffusion tensor microimaging reveals a role for Bcl-x in brain development and homeostasis”, J. Neurosci. 25, 1881-1888,(2005) Zhang J, Miller MI, Plachez C, Richards LJ, Yarowsky P, van Zijl P, Mori S. “ Mapping postnatal mouse brain development with diffusion tensor microimaging”, Neuroimage. 2005 Jul 15;26(4):1042-51. Epub 2005 Apr 21. Zhang, J, Yarowsky, P., Gordon, M.N., Di Carlo, G., Munireddy, S., van Zijl, P.C.M, Mori, S., “Detection of Amyloid Plaques in a Transgenic Models of Alzheimer’s Disease by Magnetic Resonance Imaging”, Magn. Reson. Med., 51, 452-457 (2004) Zhang, J, Richards, LJ, Yarowsky, P., Huang, Hao, van Zijl, P.C.M., Mori, S., “Three dimensional anatomical characterization of the developing mouse brain by diffusion tensor microimaging”, NeuroImage, 20, 1639-1648 (2003). Kim DS., Kim M., Ronen I., Formisano, E, Kim KH, Ugurbil, K., Mori, S., Goebel, R., “In vivo mapping of functional domains and axonal connectivity in cat visual cortex using magnetic resonance imaging”, 21, 1131-1140 (2003) Blute, J.W.M., van Zijl, P.C.M., Mori, S., "MR microscopy and histology of the central nervous system", Trends in Biotechnology, 20. S24-S28 (2002) Goto, S. Xue, R, Sugo, N., Sawada, M., Blizzard, K.K., Poitras, M.F., Johns, D.C., Dawson, T.M., Dawson, V.L., Crain, B.J., Traystman, R.J., Mori, S., Hurn, P.D., "Poly (ADP-ribose)polymerase (PARP-1) impairs early and long-term experimental stroke recovery", Stroke, 33, 1101-1106 (2002) Zhang, J., van Zijl, P.C.M., Mori, S., "Three dimensional diffusion tensor magnetic resonance micro-imaging of adult mouse brain and hippocampus", NeuroImage, 15, 892-901 (2002). Mori, S., Itoh, R., Zhang, J., Kaufmann, W.E., van Zijl, P.C.M., Solaiyappan, M., Yarowsky, P., "Diffusion tensor imaging of developing mouse brain", Magn. Reson. Med. 46, 18-23 (2001) R. Xue, M. Sawada, S. Goto, P. D. Hurn, R. J. Traystman, P. C. M. van Zijl, and S. Mori, “Rapid Three-Dimensional Diffusion MRI Facilitates the Study of Acute Stroke in Mice”, Magn. Reson. Med., 46 (1): 183-188, July, 2001. Xue, R., van Zijl, P.C.M., Crain, B.J., Solaiyappan, M., Mori, S., "In vivo 3D Reconstruction of Rat Brain Axonal Projections", Magn. Reson. Med. 42, 1123-1127 (1999)
	DTI TECHNOLOGIES: Hua K, Zhang J, Wakana S, Jiang H, Li X, Reich DS, Calabresi PA, Pekar JJ, van Zijl PC, Mori S. “ Tract probability maps in stereotaxic spaces: analyses of white matter anatomy and tract-specific quantification.”, Neuroimage. 2008 Jan 1;39(1):336-47. Epub 2007 Aug 15. Zhang, J., van Zijl, PCM, Mori, S., “Image contrast using the secondary and tertiary eigenvectors in diffusion tensor imaging”, Magn. Reson. Med, 55, 439-449, (2006) Jiang, H., van Zijl, PCM, Kim J., Pearlson, GD, Mori, S.,”DtiStudio: Resource program for diffusion tensor computation and fiber bundle tracking”, Computer Methods and Programs in Biomedicine, 81, 106-116 (2006) Lee, SK, Kim, DI, Kim J, Kim DJ, Kim HD, Kim DS, Mori, S., “Diffusion –tensor MR imaging and fiber tractography: A new method of describing aberrant fiber connections in developmental CNS anomalies”, Radiographics, 25, 53-65 (2005). Zhang, J., van Zijl, PCM, Mori, S., “Image contrast using the secondary and tertiary eigenvectors in diffusion tensor imaging”, Magn. Reson. Med, 55, 439-449, (2006) Huang, H., Zhang, J., Jiang, H., Wakana, S., Poetscher, L., Miller, M., van Zijl, P. Hillis, A., Wytik, R., Mori, S., “DTI tractography based parcellation of white matter: Application to the mid-sagittal morphology of corpus callosum”, NeuroImage, 15, 195-205 (2005) Wakana, S., Nagae-Potscher, LM, Jiang, H., van Zijl, PCM., Mori, S.,, “Macroscopic orientation component analysis (MOCA) of brain white matter and thalamus based on diffusion tensor imaging”, Magn. Reson. Med. 53, 649-657 (2005) Huang, H., Zhang, J., van Zijl, P.C.M., Mori, S., “Analysis of noise Effects on DTI-based tractography using the brute-force and multi-ROI approach”, Magn. Reson. Med., 52, 559-565 (2004) Jaermann, T., Crelier, G., Pruessmann, K.P., Golay, X., Netsch, T., van Muiswinkel, A.M.C., Mori, S., van Zijl, P.C.M., Kollias, S., and Boesiger, P., “SENSE-DTI at 3 Tesla”, Magn. Reson. Med, 51, 230-236 (2004) Xu, D., Mori, S., Shen, D., P.C.M. van Zijl, Davatzikos, C., “Spatial normalization of diffusion tensor field”, Magn. Reson. Med. 50, 175-182 (2003) Mori, S., P.C.M. van Zijl, “Fiber tracking: Principles and strategies – a technical review”, NMR in Biomed. 15, 468-480 (2002) Mori, S., "Two and three-dimensional analyses of brain white matter architecture using diffusion tensor imaging", CNS Spectrums, 7, 529-533 (2002) Dongrong, X., Mori, S., Solaiyappan, M., van Zijl, P.C.M., Davatzikos, C., "A Framework for callosal fiber distribution analysis", NeuroImage, 17, 1131-1143 (2002) Melhem, E.R., Mori, S., Mukundan, G., Kraut, M.A., Pomper, M.G., van Zijl, P.C.M., "Diffusion tensor MR imaging of the brain and white matter tractography", Am.J.Roentgen., 178, 3-16 (2002) Golay, X., Jiang, H. van Zijl, P.C.M., Mori, S., "High-resolution isotropic 3D diffusion tensor imaging of the human brain" Magn. Reson. Med. 47, 837-843 (2002) H. Jiang, X. Golay, P. C. M. van Zijl and S. Mori, "Origin and Minimization of Residual Motion-Related Artifacts in Navigator-Corrected Segmented Diffusion-Weighted EPI of the Human Brain", Magn. Reson. Med. 2002; 47,818-822 (2002). Mori, S., Kaufmann, W.E., Pearlson, G.D., Crain, B.J., Stieltjes, B., Solaiyappan, M., van Zijl, P.C.M., "In vivo visualization of human neural pathways by MRI", Annal. Neurol. 47, 412-414 (2000) Mori, S., Barkar, P.B., "Diffusion magnetic resonance imaging: its principle and applications", The New Anatomist, Anat. Rec. 257, 102-109 (1999) Mori, S., Crain, B.J., Chacko, V.P., van Zijl, P.C.M., "Three dimensional tracking of axonal projection in the brain by magnetic resonance imaging", Ann. Neurol., 45, 265-269 (1999)